SAMTOOLS INSTALL INSTALL
How do you install samtools The easiest way to do this to check out the most recent samtools source code from the github project page.
To install the wrapper copy or move the following files under the Galaxy tools. Samtools does not work with the entire file of aligned reads, but rather works in a stream which allows Unix commands to be used in conjunction with the SAM files.
We recommend using anaconda and the conda command to install dependenciesĪccept all defaults for “Do you wish the installer to initialize Anaconda3 by running conda init?” say Yes. Synopsis: BAM coverage statistics using samtools idxstats and depth. Specifically, we shall install the bioinformatics package SAMtools into a Docker container, push it to the Seven Bridges image registry, describe the sort subcommand in the tool editor, and then use the imported sort tool in a workflow on the Platform.
To run VeloCyto, you will need Python >=3.6.0 (we have no plans to support python<=3.5).